Interactions of multiple gene alterations in colorectal liver metastases
Review Article

Interactions of multiple gene alterations in colorectal liver metastases

Yoshikuni Kawaguchi1,2, Jenilette D. Velasco1, Elsa M. Arvide1, Steven H. Wei1, Jean-Nicolas Vauthey1

1Department of Surgical Oncology, The University of Texas MD Anderson Cancer Center, Houston, TX, USA; 2Hepato-Biliary-Pancreatic Surgery Division, Department of Surgery, Graduate School of Medicine, the University of Tokyo, Tokyo, Japan

Contributions: (I) Conception and design: Y Kawaguchi, JN Vauthey; (II) Administrative support: JD Velasco, EM Arvide, SH Wei, JN Vauthey; (III) Provision of study materials or patients: All authors; (IV) Collection and assembly of data: Y Kawaguchi, JD Velasco, EM Arvide, SH Wei; (V) Data analysis and interpretation: All authors; (VI) Manuscript writing: All authors; (VII) Final approval of manuscript: All authors.

Correspondence to: Yoshikuni Kawaguchi, MD, PhD. Hepato-Pancreatico-Biliary Surgery Division, Department of Surgery, Graduate School of Medicine, the University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-8655, Japan. Email:

Abstract: The advancements in next generation sequencing have expanded the information available in clinical practice. Alterations of TP53, APC, RAS, PIK3CA, and SMAD4 are present in more than 10% of patients with colorectal liver metastases (CLM). Of these genes, TP53, RAS and SMAD4 were associated with worse survival in patients undergoing CLM resection. Testing multiple gene alterations provides a more precise prognosis for patients undergoing CLM resection and may be useful for better clinical decision making.

Keywords: Somatic gene alteration; colorectal liver metastasis (CLM); liver resection; survival

Submitted Jun 28, 2019. Accepted for publication Aug 01, 2019.

doi: 10.21037/cco.2019.08.06


Colorectal cancer is genetically heterogenous (1). Approximately 15–30% of patients with colorectal cancer develop colorectal liver metastases (CLM). Liver resection is regarded as a potentially curative treatment for patients with CLM and provides 5-year overall survival (OS) rates of approximately 40–60% (2-4). However, we experience clinical heterogeneity in patients undergoing CLM resection. Some patients have a good prognosis after CLM resection and achieve a prolonged cancer-free interval or a cure, while others have a progressive fatal disease. The recent development of the next generation sequencing has led to increased availability of gene alteration information in clinic practice. RAS alteration initially became the main focus because it determines resistance to anti-epidermal growth factor receptor (EGFR) agents (5-7). Furthermore, the prognostic role of alterations in RAS and BRAF has been well studied in patients with colorectal cancer (8-13). However, prognostic roles of gene alterations other than RAS and BRAF remain unclear. This article reviews the association of multiple gene alterations with prognosis after CLM resection to be useful for clinical decision-making.

Frequency of somatic gene alteration in patients with CLM

We recently reported 507 patients who had genetic sequencing data of 50 cancer-related genes and underwent CLM resection (14). Of the 50 genes analyzed, alterations of the following 13 genes were found in more than 1% of patients: TP53, APC, KRAS, PIK3CA, SMAD4, FBXW7, NRAS, ERBB2, ATM, BRAF, PTEN, RB1, and CTNNB1 (Table 1). The frequencies of gene alterations are similar to a project from the Cancer Genome Atlas Network (1). Alterations in TP53, APC, RAS (KRAS + NRAS) occur in more than 50% of patients with colorectal cancer. PIK3CA, SMDA4, and FBXW7 are the second most frequently altered gene group, ranging from 5% to 20% of alterations in this patient group.

Table 1
Table 1 Frequency of gene alterations in 507 patients who underwent resection of colorectal liver metastases
Full table

Alterations in RAS and BRAF and prognosis after CLM resection

Chemotherapy regimens, including anti-EGFR agents, have demonstrated improved survival in patients with unresectable metastatic colorectal cancer (15). Alterations in the RAS gene family (KRAS, NRAS, and HRAS) were found to be an important biomarker and used clinically to determine response to anti-EGFR therapy (5-7). The advancements in molecular-targeted therapy have quickly drawn attention to information on somatic alterations in colorectal cancer.

Studies have assessed an association of RAS alteration with prognosis in patients undergoing CLM resection (9,11,14,16-24). Most studies show worse OS and recurrence-free survival (RFS) in RAS altered patients than in RAS wild-type patients (9,11,14,23). In contrast, other studies have not shown significant differences between RAS altered patients and RAS wild-type patients in OS (17,18,21), or in RFS (20,21), using a multivariable Cox model.

Approximately 2–5% of patients undergoing CLM resection have BRAF alteration (12-14). Studies have reported that BRAF alteration occurs in approximately 10% of all patients with colorectal cancer (25). Moreover, BRAF altered patients with colorectal cancer were associated with worse prognosis (8,10). However, the rarity of BRAF altered patients undergoing CLM resection makes it hard to assess the prognostic role of BRAF alteration with sufficient statistical power. Recent multi-institutional studies evaluated 35 patients with BRAF alteration out of 1,497 total patients (12), and 45 patients with BRAF alteration out of 853 patients (13). Both studies demonstrated that OS and RFS were significantly worse in BRAF altered patients than in BRAF wild-type patients (12,13).

Alterations in TP53 and prognosis after CLM resection

TP53 is a tumor suppressor gene in the p53 pathway and has a role to inhibit tumor cell growth (26,27). The prognostic role of TP53 alteration in patients undergoing CLM resection has been previously studied in early 2000s (28-34). While four studies failed to show the association of TP53 alteration with prognosis (30,31,33,34), there are four other studies which showed that TP53 altered patients were associated with worse OS than TP53 wild-type patients (28,32,35). One study has shown better OS and RFS in TP53 altered patients than in TP53 wild-type patients (29). Because the type of gene alteration influences the change of proteins and functions, Chun et al. analyzed patients with TP53 altered patients (24) by classifying a risk of missense TP53 alteration into high and low risk groups on the basis of the evolutionary action score (36,37). TP53 alteration with a high evolutionary action score is associated with worse survival (24). OS and RFS were worse in patients with co-alteration in RAS and TP53 than in patients with one alteration of the two genes and in patients with no alteration (24,38).

Multiple alterations and prognosis after CLM resection

We recently analyzed prognostic roles of five frequently altered genes (TP53, APC, RAS, PIK3CA, SMAD4) as well as BRAF in 507 patients undergoing CLM resection (14). According to a multivariable Cox proportional hazards model analysis, alterations in RAS, TP53, and SMAD4 were significantly associated with worse OS and RFS, together with other clinicopathologic factors. BRAF alteration was an independent risk factor for OS but not for RFS. Since alterations in RAS, TP53, and SMAD4 were independently associated with OS and RFS, we calculated multivariable hazard ratios (HR) focusing on number of alterations among these three genes. Co-existing alterations of all three genes (triple alteration) was significantly associated with worse OS than co-existing alteration in any two of the genes (double alteration) [HR 3.21, 95% confidence interval (CI): 1.72–5.99, P<0.001]. Triple alteration was also significantly associated with worse OS than alteration in only one of the genes (single alteration) (HR 6.04, 95% CI: 3.21–11.3, P<0.001) and no alteration in any of the genes (all wild-type) (HR 8.61, 95% CI: 3.80–19.5, P<0.001). Similarly, triple alteration was significantly associated with worse RFS than double alteration (HR 2.06, 95% CI: 1.28–3.29, P=0.003), single alteration (HR 3.17, 95% CI: 1.97–5.07, P<0.001), and all wild-type (HR 3.72, 95% CI: 2.14–6.46, P<0.001). Furthermore, OS and RFS did not differ significantly between patients with single alteration vs. patients with all wild-type (OS, HR 1.43, 95% CI: 0.77–2.63, P=0.256; RFS, HR 1.18, 95% CI: 0.82–1.68, P=0.378). Based on this finding, we compared OS and RFS between patients with RAS alteration and wild-type TP53 and SMAD4 and patients with RAS wild-type. OS and RFS did not differ significantly between both patient groups: OS, HR 0.95, 95% CI: 0.55–1.65, P=0.858; RFS, HR 1.06, 95% CI: 0.77–1.44, P=0.729. Our findings likely explain why some studies found prognostic role of RAS alteration (9,11,14,23) while others failed to show an association of RAS alteration with prognosis (17,18,20,21). Overall, the testing of multiple gene alterations, including the analysis of co-existing alterations, may provide additional prognostic information in patients undergoing CLM resection.

RAS, TP53, and SMAD4 belong to different cancer-related signaling pathways (i.e., MAPK pathway, p53 pathway, and TGFβ pathway). Our recent study suggests that through the corresponding signaling pathways, the deleterious effects on survival are accumulated from single to double alterations, and also from double to triple alterations. However, our study cannot explain the interactions that may exist between these alterations. Studies report that there may exist an interaction and synergism for progression of carcinoma between MAPK pathway, p53 pathway, and TGFβ pathway. These interactions may in part account for the worse prognosis of patients with multiple gene alterations (39-41).


In patients with colorectal cancer, alterations in RAS and BRAF have been increasingly examined as biomarkers for testing resistance to anti-EGFR agents. Advancements in next generation sequencing have made multiple gene testing clinically available. Because RAS alteration status alone is not sufficient to predict survival after CLM resection, information on multiple gene alteration status may aid in predicting prognosis more precisely; and therefore, influence the clinical decision-making process. Further developments in other molecular targeted therapies may further highlight the importance of information on gene sequencing.


The authors thank Ms. Ruth Haynes for administrative support in the preparation of this manuscript.

Funding: This article was supported in part by the National Institutes of Health (T32 CA 009599) and the MD Anderson Cancer Center Support Grant (CA016672).


Conflicts of Interest: The authors have no conflicts of interest to declare.

Ethical Statement: The authors are accountable for all aspects of the work in ensuring that questions related to the accuracy or integrity of any part of the work are appropriately investigated and resolved.


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Cite this article as: Kawaguchi Y, Velasco JD, Arvide EM, Wei SH, Vauthey JN. Interactions of multiple gene alterations in colorectal liver metastases. Chin Clin Oncol 2019;8(5):50. doi: 10.21037/cco.2019.08.06